"As for having a three-way switch and a VTT. How would you wire that up?"

I would wire it up just like a Strat with one less pickup (and obviously one less lug on the switch). You can find an appropriate American Series Strat diagram on Mr. Gearhead.

Things do get a bit more complicated if you choose to use a Q-filter instead of one of the tone controls. That said, if you only want a Q-filter for one of the pickups (i.e. bridge pickup), then the diagram is still just like a Strat, but with the simple modifications that turn a tone into a Q-tone.